The New Fuss About Best 3d Mouse For Fusion 360 Cam Tutorial 2d AnimationThis script is meant to automate the generation of multiple batch docking jobs where a single ligand is being docked into a database of proteins. This script outputs multiple .svl files that can then be docked on another computer. This script requires user input during the generation of the batch files but greatly automates the process. Open the protein in the main window. Calculate the fingerprint of docked poses of the ligands as usual. To execute a similarity search protein. Reference ligand must be in the MOE main window.
Execute Command will execute any selected text, or if there is no selected text it will open a command line in the current text editor. Prompts the user to sequentially select two sets of atoms defining centroid 1. Centroid 2; the centroid distance is then calculated throughout the database. In the MOE Commands Line, type dbloop 'databasename.mdb' to run the code, which will count heavy atoms in each molecule in the first molecular field in the database. If the compounds came from an SDF file with chirality info, they will appear flat in the source MOE database. Additionally non-chiral structures are listed in the new database. This tool is very useful for saving a set of images to be made into a movie or for viewing multiple angles of a system. It saves JPEG files and can also write POVRAY if Andrew Henry's write_pov.svl function is loaded. For POVRAY you will have to edit this file to uncomment the Write_POV lines. Given a database of compounds and a SMILES/SMARTS match string , the function loops through the database and decomposes the compounds based on the scaffold match.
0 comments:
Post a Comment